Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| COAD | rs17118262 | chr12:56435920 | C/G | 2.74E-5 | 261 | 18.05 | 22.33 | 5.87 | KM Plot |
| COAD | rs17461759 | chr6:128839639 | A/G | 5.46E-6 | 260 | 19.32 | 15.23 | 5.73 | KM Plot |
| COAD | rs17592117 | chr10:52643038 | T/C | 0 | 256 | 17.67 | 23.93 | 1.97 | KM Plot |
| COAD | rs17821781 | chr17:2163540 | A/G | 4.77E-8 | 265 | 2.77 | 19.87 | 17.67 | KM Plot |
| COAD | rs183624073 | chr5:54657439 | C/A | 1.51E-5 | 262 | 17.9 | 19.93 | 5.73 | KM Plot |
| COAD | rs1882335 | chr4:185108745 | A/G | 7.15E-8 | 265 | 5.1 | 27.23 | 17.45 | KM Plot |
| COAD | rs200470549 | chr22:50548270 | T/TA | 4.7E-14 | 265 | 17.45 | 19.52 | 3.07 | KM Plot |
| COAD | rs2297031 | chr10:135232654 | C/T | 1.14E-6 | 265 | 18.9 | 19 | 12.77 | KM Plot |
| COAD | rs2297032 | chr10:135234580 | C/T | 1.69E-5 | 258 | 19.52 | 16.87 | 13.75 | KM Plot |
| COAD | rs2297033 | chr10:135234848 | C/T | 1.69E-5 | 258 | 19.52 | 16.87 | 13.75 | KM Plot |
| COAD | rs34011370 | chr12:131139761 | A/T | 0 | 255 | 17.27 | 22.07 | 1.97 | KM Plot |
| COAD | rs34303864 | chr12:56439373 | T/C | 2.85E-5 | 260 | 18 | 22.33 | 5.87 | KM Plot |
| COAD | rs35167231 | chr10:135236417 | TC/T | 1.95E-5 | 256 | 19.33 | 16.47 | 13.75 | KM Plot |
| COAD | rs35485002 | chr12:56429575 | A/G | 2.74E-5 | 261 | 18.05 | 22.33 | 5.87 | KM Plot |
| COAD | rs3799534 | chr6:7868368 | T/C | 4.68E-6 | 259 | 17.77 | 27.47 | 3.52 | KM Plot |